SCN5A Variant F434L
Summary of observed carriers, functional annotations, and structural context for SCN5A F434L. Data combine curated literature, international cohorts, and gnomAD observations.
Estimated LQT3 penetrance
5%
0/10 effective observations
Estimated BrS1 penetrance
14%
1/10 effective observations
Total carriers
0
0 BrS1 · 0 LQT3 · 0 unaffected
Variant features alone are equivalent to phenotyping 1 individuals for Brugada syndrome and 0 individuals for LQT3.
In silico predictors
| PROVEAN | PolyPhen-2 | BLAST-PSSM | REVEL | Penetrance Density BrS (%) | Penetrance Density LQT3 (%) |
|---|---|---|---|---|---|
| NA | NA | NA | 0.739 | 11 | 2 |
PROVEAN scores below -2 suggest deleterious impact. REVEL scores above 0.5–0.75 are often interpreted as likely pathogenic. PolyPhen-2 scores above 0.85 are typically pathogenic. Penetrance density summarises neighbouring residue risk (Kroncke et al. 2019).
Reported carrier data
| Source | Year | Carriers | Unaffected | LQT3 | BrS1 | Other | Other Disease |
|---|---|---|---|---|---|---|---|
| Literature, cohort, and gnomAD | – | 0 | 0 | 0 | 0 | – | |
| Variant features alone | – | 15 | 14 | 0 | 1 | – | – |
Totals may differ from individual publications due to duplicate patients removed during curation.
Nearby variants
Neighbouring residues within 15 Ångström provide structural context. Variants listed in the right-most column have been observed clinically or in gnomAD.
| Neighbour residue | Distance (Å) | Observed variants |
|---|---|---|
| 419 | 15 | Q419X, |
| 420 | 14 | |
| 421 | 14 | |
| 422 | 13 | |
| 423 | 13 | |
| 424 | 12 | I424M, |
| 425 | 11 | A425P, A425T, |
| 426 | 11 | |
| 427 | 10 | |
| 428 | 9 | E428K, |
| 429 | 8 | E429K, p.E429del, |
| 430 | 8 | K430E, |
| 431 | 7 | |
| 432 | 5 | |
| 433 | 4 | R433H, R433S, R433C, |
| 434 | 0 | |
| 435 | 4 | |
| 436 | 5 | |
| 437 | 7 | A437V, |
| 438 | 8 | M438L, M438T, M438L, |
| 439 | 8 | E439V, E439K, |
| 440 | 9 | |
| 441 | 10 | L441F, |
| 442 | 11 | |
| 443 | 11 | |
| 444 | 12 | E444fsX14, |
| 445 | 13 | H445Y, H445D, H445Q, H445Q, |
| 446 | 13 | E446K, |
| 447 | 14 | A447S, A447G, c.1339-24G>A, c.1338+2T>A |
| 448 | 14 | |
| 449 | 15 | Y449C, T449A, |