SCN5A Variant W360S
Summary of observed carriers, functional annotations, and structural context for SCN5A W360S. Data combine curated literature, international cohorts, and gnomAD observations.
Estimated LQT3 penetrance
6%
0/10 effective observations
Estimated BrS1 penetrance
20%
2/10 effective observations
Total carriers
0
0 BrS1 · 0 LQT3 · 0 unaffected
Variant features alone are equivalent to phenotyping 2 individuals for Brugada syndrome and 0 individuals for LQT3.
In silico predictors
| PROVEAN | PolyPhen-2 | BLAST-PSSM | REVEL | Penetrance Density BrS (%) | Penetrance Density LQT3 (%) |
|---|---|---|---|---|---|
| NA | NA | NA | 0.924 | 22 | 4 |
PROVEAN scores below -2 suggest deleterious impact. REVEL scores above 0.5–0.75 are often interpreted as likely pathogenic. PolyPhen-2 scores above 0.85 are typically pathogenic. Penetrance density summarises neighbouring residue risk (Kroncke et al. 2019).
Reported carrier data
| Source | Year | Carriers | Unaffected | LQT3 | BrS1 | Other | Other Disease |
|---|---|---|---|---|---|---|---|
| Literature, cohort, and gnomAD | – | 0 | 0 | 0 | 0 | – | |
| Variant features alone | – | 15 | 13 | 0 | 2 | – | – |
Totals may differ from individual publications due to duplicate patients removed during curation.
Nearby variants
Neighbouring residues within 15 Ångström provide structural context. Variants listed in the right-most column have been observed clinically or in gnomAD.
| Neighbour residue | Distance (Å) | Observed variants |
|---|---|---|
| 364 | 8 | |
| 277 | 12 | |
| 266 | 14 | L266H, |
| 919 | 15 | |
| 276 | 12 | L276P, L276Q, |
| 363 | 6 | |
| 348 | 12 | P348A, |
| 360 | 0 | |
| 355 | 9 | F355C, F355I, |
| 1549 | 12 | |
| 356 | 7 | D356N, |
| 361 | 6 | |
| 904 | 9 | W904X, |
| 366 | 12 | |
| 365 | 11 | |
| 354 | 7 | |
| 1546 | 13 | M1546T, |
| 349 | 12 | D349N, |
| 1550 | 13 | |
| 262 | 14 | S262G, |
| 357 | 6 | |
| 272 | 14 | |
| 274 | 13 | G274C, |
| 362 | 8 | |
| 911 | 12 | G911E, |
| 261 | 14 | |
| 273 | 13 | |
| 920 | 13 | |
| 900 | 12 | |
| 269 | 11 | |
| 345 | 15 | |
| 917 | 13 | L917V, L917R, |
| 913 | 12 | |
| 916 | 10 | |
| 912 | 8 | Q912R, |
| 347 | 10 | |
| 906 | 14 | |
| 1548 | 15 | E1548K, G1548K, |
| 351 | 8 | G351C, G351S, G351D, G351V |
| 910 | 15 | S910L, |
| 265 | 11 | A265V, |
| 350 | 11 | H350Q, H350Q, |
| 358 | 9 | |
| 903 | 10 | p.M903CfsX29, |
| 367 | 11 | R367L, R367C, R367H, |
| 346 | 12 | E346D, E346X, E346D, E346K, E346G, |
| 359 | 4 | p.A359PfsX12, A359T, |
| 1547 | 15 | V1547L, V1547L, |
| 905 | 15 | |
| 352 | 5 | Y352C, |
| 915 | 13 | C915R, |
| 368 | 14 | |
| 899 | 13 | |
| 268 | 12 | G268S, |
| 377 | 13 | |
| 908 | 13 | |
| 914 | 15 | |
| 353 | 7 | T353I, |
| 907 | 9 |